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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SBMLLevel 3: an extensible format for the exchange and reuse of biological models
Sarah Keating, Dagmar Waltemath, Matthias König, et al.
Molecular Systems Biology (2020) Vol. 16, Iss. 8
Open Access | Times Cited: 261

Showing 1-25 of 261 citing articles:

PANTHER : Making genome‐scale phylogenetics accessible to all
Paul D. Thomas, Dustin Ebert, Anushya Muruganujan, et al.
Protein Science (2021) Vol. 31, Iss. 1, pp. 8-22
Open Access | Times Cited: 1211
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Johannes Zimmermann, Christoph Kaleta, Silvio Waschina
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 190
Automated methods for cell type annotation on scRNA-seq data
Giovanni Pasquini, Jesús Eduardo Rojo Arias, Patrick Schäfer, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 961-969
Open Access | Times Cited: 183
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models
Sébastien Moretti, Van Du T. Tran, Florence Mehl, et al.
Nucleic Acids Research (2020) Vol. 49, Iss. D1, pp. D570-D574
Open Access | Times Cited: 138
Severe COVID-19: A multifaceted viral vasculopathy syndrome
Cynthia M. Magro, Justin Mulvey, Jeffrey Kubiak, et al.
Annals of Diagnostic Pathology (2020) Vol. 50, pp. 151645-151645
Open Access | Times Cited: 96
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, et al.
Molecular Systems Biology (2021) Vol. 17, Iss. 10
Open Access | Times Cited: 79
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance
Omar Awile, Pramod Kumbhar, Nicolas Cornu, et al.
Frontiers in Neuroinformatics (2022) Vol. 16
Open Access | Times Cited: 42
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia
William T. Scott, Sara Benito-Vaquerizo, Johannes Zimmermann, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011363-e1011363
Open Access | Times Cited: 28
Agent-based models in cellular systems
Jonas Pleyer, Christian Fleck
Frontiers in Physics (2023) Vol. 10
Open Access | Times Cited: 25
Genetic circuits for metabolic flux optimization
Xianhao Xu, Xueqin Lv, Xinyu Bi, et al.
Trends in Microbiology (2024) Vol. 32, Iss. 8, pp. 791-806
Closed Access | Times Cited: 8
Optimal control of agent-based models via surrogate modeling
Luís L. Fonseca, Lucas Böttcher, Borna Mehrad, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012138-e1012138
Open Access | Times Cited: 1
Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria
Eveline‐Marie Lammens, Pablo I. Nikel, Rob Lavigne
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 62
Spatially resolved analysis of FFPE tissue proteomes by quantitative mass spectrometry
Katarzyna Buczak, Joanna Kirkpatrick, Felicia Truckenmueller, et al.
Nature Protocols (2020) Vol. 15, Iss. 9, pp. 2956-2979
Closed Access | Times Cited: 54
Optogenetics and biosensors set the stage for metabolic cybergenetics
César Carrasco‐López, Sergio A. García-Echauri, Therese Kichuk, et al.
Current Opinion in Biotechnology (2020) Vol. 65, pp. 296-309
Open Access | Times Cited: 52
Community standards to facilitate development and address challenges in metabolic modeling
Maureen A. Carey, Andreas Dräger, Moritz Emanuel Beber, et al.
Molecular Systems Biology (2020) Vol. 16, Iss. 8
Open Access | Times Cited: 51
Endothelial glycocalyx shields the interaction of SARS-CoV-2 spike protein with ACE2 receptors
Marta Targosz‐Korecka, Agata Kubisiak, Damian Klóska, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 47
Advances in flux balance analysis by integrating machine learning and mechanism-based models
Ankur Sahu, Mary Ann Blätke, Jędrzej Szymański, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 4626-4640
Open Access | Times Cited: 46
libRoadRunner 2.0: a high performance SBML simulation and analysis library
Ciaran Welsh, Jin Xu, Lucian P. Smith, et al.
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 31
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws
Brandon C Reyes, Irene Otero‐Muras, Vladislav Petyuk
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 28
A pathway model of glucose-stimulated insulin secretion in the pancreatic β-cell
M. Deepa Maheshvare, Soumyendu Raha, Matthias König, et al.
Frontiers in Endocrinology (2023) Vol. 14
Open Access | Times Cited: 17
FAIR Data and Software: Improving Efficiency and Quality of Biocatalytic Science
Jürgen Pleiss
ACS Catalysis (2024) Vol. 14, Iss. 4, pp. 2709-2718
Closed Access | Times Cited: 7
PyCoMo: a python package for community metabolic model creation and analysis
Michael Predl, Marianne Mießkes, Thomas Rattei, et al.
Bioinformatics (2024)
Open Access | Times Cited: 7
Stress Knowledge Map: A knowledge graph resource for systems biology analysis of plant stress responses
Carissa Bleker, Živa Ramšak, Andras Bittner, et al.
Plant Communications (2024), pp. 100920-100920
Open Access | Times Cited: 6
The Biology and Biochemistry of Kynurenic Acid, a Potential Nutraceutical with Multiple Biological Effects
Luana de Fátima Alves, J. Bernadette Moore, Douglas B. Kell
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 16, pp. 9082-9082
Open Access | Times Cited: 6
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