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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

spliceJAC : transition genes and state‐specific gene regulation from single‐cell transcriptome data
Federico Bocci, Peijie Zhou, Qing Nie
Molecular Systems Biology (2022) Vol. 18, Iss. 11
Open Access | Times Cited: 28

Showing 1-25 of 28 citing articles:

Reconstructing growth and dynamic trajectories from single-cell transcriptomics data
Yutong Sha, Yuchi Qiu, Peijie Zhou, et al.
Nature Machine Intelligence (2023) Vol. 6, Iss. 1, pp. 25-39
Open Access | Times Cited: 24
Single-cell multi-omics and lineage tracing to dissect cell fate decision-making
Laleh Haghverdi, Leif S. Ludwig
Stem Cell Reports (2023) Vol. 18, Iss. 1, pp. 13-25
Open Access | Times Cited: 20
From time-series transcriptomics to gene regulatory networks: A review on inference methods
Malvina Marku, Véra Pancaldi
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011254-e1011254
Open Access | Times Cited: 15
Quantifying Landscape‐Flux via Single‐Cell Transcriptomics Uncovers the Underlying Mechanism of Cell Cycle
Ligang Zhu, Jin Wang
Advanced Science (2024) Vol. 11, Iss. 16
Open Access | Times Cited: 4
Spatial transition tensor of single cells
Peijie Zhou, Federico Bocci, Tiejun Li, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 1053-1062
Open Access | Times Cited: 4
Order-of-Mutation Effects on Cancer Progression: Models for Myeloproliferative Neoplasm
Yue Wang, Blerta Shtylla, Tom Chou
Bulletin of Mathematical Biology (2024) Vol. 86, Iss. 3
Open Access | Times Cited: 3
Tipping points in epithelial-mesenchymal lineages from single-cell transcriptomics data
Manuel Barcenas, Federico Bocci, Qing Nie
Biophysical Journal (2024) Vol. 123, Iss. 17, pp. 2849-2859
Open Access | Times Cited: 3
Data‐ and theory‐driven approaches for understanding paths of epithelial–mesenchymal transition
Tian Hong, Jianhua Xing
genesis (2024) Vol. 62, Iss. 2
Open Access | Times Cited: 3
Theoretical and computational tools to model multistable gene regulatory networks
Federico Bocci, Dongya Jia, Qing Nie, et al.
Reports on Progress in Physics (2023) Vol. 86, Iss. 10, pp. 106601-106601
Open Access | Times Cited: 7
exFINDER: identify external communication signals using single-cell transcriptomics data
Changhan He, Peijie Zhou, Qing Nie
Nucleic Acids Research (2023) Vol. 51, Iss. 10, pp. e58-e58
Open Access | Times Cited: 7
Small data methods in omics: the power of one
Kevin G. Johnston, Steven F. Grieco, Qing Nie, et al.
Nature Methods (2024) Vol. 21, Iss. 9, pp. 1597-1602
Closed Access | Times Cited: 2
Leveraging gene correlations in single cell transcriptomic data
Kai Silkwood, Emmanuel Dollinger, Joshua Gervin, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Learning cell-specific networks from dynamics and geometry of single cells
Stephen Y. Zhang, Michael P. H. Stumpf
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Uncovering underlying physical principles and driving forces of cell differentiation and reprogramming from single-cell transcriptomics
Ligang Zhu, Songlin Yang, Kun Zhang, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 34
Open Access | Times Cited: 1
Gene regulatory network inference with covariance dynamics
Yue Wang, Peng Zheng, Yu‐Chen Cheng, et al.
Mathematical Biosciences (2024) Vol. 377, pp. 109284-109284
Closed Access | Times Cited: 1
Identifying key factors in cell fate decisions by machine learning interpretable strategies
Xinyu He, Ruoyu Tang, Jie Lou, et al.
Journal of Biological Physics (2023) Vol. 49, Iss. 4, pp. 443-462
Closed Access | Times Cited: 3
Leveraging gene correlations in single cell transcriptomic data
Kai Silkwood, Emmanuel Dollinger, Josh Gervin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
On the Mathematics of RNA Velocity II: Algorithmic Aspects
Tiejun Li, Yizhuo Wang, Guoguo Yang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Data-driven energy landscape reveals critical genes in cancer progression
Juntan Liu, Chunhe Li
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access
WENDY: Gene Regulatory Network Inference with Covariance Dynamics
Yue Wang, Peng Zheng, Yu‐Chen Cheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
ClusterMatch aligns single-cell RNA-sequencing data at the multi-scale cluster level via stable matching
Teer Ba, Miao Hao, Lirong Zhang, et al.
Bioinformatics (2024) Vol. 40, Iss. 8
Open Access
Dissecting reversible and irreversible single cell state transitions from gene regulatory networks
Daniel A. Ramirez, Mingyang Lu
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
scGRN-Entropy: Inferring cell differentiation trajectories using single-cell data and gene regulation network-based transfer entropy
Rui Sun, Wenjie Cao, S. Z. Li, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 11, pp. e1012638-e1012638
Open Access
RegVelo: gene-regulatory-informed dynamics of single cells
W. Wang, Zhiyuan Hu, Philipp Weiler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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