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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Updated benchmarking of variant effect predictors using deep mutational scanning
Benjamin Livesey, Joseph A. Marsh
Molecular Systems Biology (2023) Vol. 19, Iss. 8
Open Access | Times Cited: 64

Showing 1-25 of 64 citing articles:

Accurate proteome-wide missense variant effect prediction with AlphaMissense
Jun Cheng, Guido Novati, Joshua Pan, et al.
Science (2023) Vol. 381, Iss. 6664
Open Access | Times Cited: 882
Genome-wide prediction of disease variant effects with a deep protein language model
Nadav Brandes, Grant Goldman, Charlotte H. Wang, et al.
Nature Genetics (2023) Vol. 55, Iss. 9, pp. 1512-1522
Open Access | Times Cited: 221
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions
Max Schubach, Thorben Maaß, Lusiné Nazaretyan, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. D1, pp. D1143-D1154
Open Access | Times Cited: 135
ProteinGym: Large-Scale Benchmarks for Protein Design and Fitness Prediction
Pascal Notin, Aaron W. Kollasch, Daniel P. Ritter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 96
Machine Learning-Guided Protein Engineering
Petr Kouba, Pavel Kohout, Faraneh Haddadi, et al.
ACS Catalysis (2023) Vol. 13, Iss. 21, pp. 13863-13895
Open Access | Times Cited: 94
Sequence modeling and design from molecular to genome scale with Evo
Eric Nguyen, Michael Poli, Matthew G. Durrant, et al.
Science (2024) Vol. 386, Iss. 6723
Open Access | Times Cited: 64
Sequence modeling and design from molecular to genome scale with Evo
Éric Nguyen, Michael Poli, Matthew G. Durrant, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 52
Gain-of-function human UNC93B1 variants cause systemic lupus erythematosus and chilblain lupus
C. David, Carlos A. Arango-Franco, Mihaly Badonyi, et al.
The Journal of Experimental Medicine (2024) Vol. 221, Iss. 8
Open Access | Times Cited: 19
Guidelines for releasing a variant effect predictor
Benjamin Livesey, Mihaly Badonyi, Mafalda Dias, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access | Times Cited: 2
The genetic architecture of protein stability
André J. Faure, Aina Martí-Aranda, Cristina Hidalgo-Carcedo, et al.
Nature (2024)
Open Access | Times Cited: 14
Variant effect predictor correlation with functional assays is reflective of clinical classification performance
Benjamin Livesey, Joseph A. Marsh
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Are protein language models the new universal key?
Konstantin Weißenow, Burkhard Rost
Current Opinion in Structural Biology (2025) Vol. 91, pp. 102997-102997
Open Access | Times Cited: 1
Genome modeling and design across all domains of life with Evo 2
Garyk Brixi, Matthew G. Durrant, Ja‐Lok Ku, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Deep indel mutagenesis reveals the impact of amino acid insertions and deletions on protein stability and function
Magdalena Topolska, Antoni Beltran, Ben Lehner
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Correspondence between functional scores from deep mutational scans and predicted effects on protein stability
Lukas Gerasimavicius, Benjamin Livesey, Joseph A. Marsh
Protein Science (2023) Vol. 32, Iss. 7
Open Access | Times Cited: 18
Predicting pathogenic protein variants
Joseph A. Marsh, Sarah A. Teichmann
Science (2023) Vol. 381, Iss. 6664, pp. 1284-1285
Open Access | Times Cited: 18
Predicted mechanistic impacts of human protein missense variants
Jürgen Jänes, Marc Müller, Senthil Selvaraj, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Benchmarking computational variant effect predictors by their ability to infer human traits
Daniel Tabet, Da Kuang, Megan Lancaster, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 7
Deep indel mutagenesis reveals the impact of amino acid insertions and deletions on protein stability and function
Magdalena Topolska, Toni Beltran, Ben Lehner
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Proteome-scale prediction of molecular mechanisms underlying dominant genetic diseases
Mihaly Badonyi, Joseph A. Marsh
PLoS ONE (2024) Vol. 19, Iss. 8, pp. e0307312-e0307312
Open Access | Times Cited: 5
The genetic architecture of protein stability
André J. Faure, Aina Martí-Aranda, Cristina Hidalgo-Carcedo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 12
Multiplex, multimodal mapping of variant effects in secreted proteins
Nicholas A. Popp, Rachel L. Powell, Melinda K. Wheelock, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Variant effect predictors: a systematic review and practical guide
Cristian Riccio, Max L. Jansen, Linlin Guo, et al.
Human Genetics (2024) Vol. 143, Iss. 5, pp. 625-634
Open Access | Times Cited: 4
Deep mutational scanning quantifies DNA binding and predicts clinical outcomes of PAX6 variants
Alexander F McDonnell, Marcin Plech, Benjamin Livesey, et al.
Molecular Systems Biology (2024) Vol. 20, Iss. 7, pp. 825-844
Open Access | Times Cited: 4
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