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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data
Xing‐Xing Shen, Xiaofan Zhou, Jacek Kominek, et al.
G3 Genes Genomes Genetics (2016) Vol. 6, Iss. 12, pp. 3927-3939
Open Access | Times Cited: 220

Showing 1-25 of 220 citing articles:

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Robert M. Waterhouse, Mathieu Seppey, Felipe A. Simão, et al.
Molecular Biology and Evolution (2017) Vol. 35, Iss. 3, pp. 543-548
Open Access | Times Cited: 1983
Outline of Fungi and fungus-like taxa
NN Wijayawardene
Mycosphere (2020) Vol. 11, Iss. 1, pp. 1060-1456
Open Access | Times Cited: 547
Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum
Xing‐Xing Shen, Dana A. Opulente, Jacek Kominek, et al.
Cell (2018) Vol. 175, Iss. 6, pp. 1533-1545.e20
Open Access | Times Cited: 531
Contentious relationships in phylogenomic studies can be driven by a handful of genes
Xing‐Xing Shen, Chris Todd Hittinger, Antonis Rokas
Nature Ecology & Evolution (2017) Vol. 1, Iss. 5
Open Access | Times Cited: 486
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, et al.
PLoS Biology (2020) Vol. 18, Iss. 12, pp. e3001007-e3001007
Open Access | Times Cited: 422
Fungal evolution: diversity, taxonomy and phylogeny of the Fungi
Miguel A. Naranjo‐Ortiz, Toni Gabaldón
Biological reviews/Biological reviews of the Cambridge Philosophical Society (2019) Vol. 94, Iss. 6, pp. 2101-2137
Open Access | Times Cited: 303
Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity
Sagie Brodsky, Tamar Jana, Karin Mittelman, et al.
Molecular Cell (2020) Vol. 79, Iss. 3, pp. 459-471.e4
Open Access | Times Cited: 292
A genome-scale phylogeny of the kingdom Fungi
Yuanning Li, Jacob L. Steenwyk, Ying Chang, et al.
Current Biology (2021) Vol. 31, Iss. 8, pp. 1653-1665.e5
Open Access | Times Cited: 259
Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases
Anurag Priyam, Ben J. Woodcroft, Vivek Rai, et al.
Molecular Biology and Evolution (2019) Vol. 36, Iss. 12, pp. 2922-2924
Open Access | Times Cited: 257
The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies
Joseph W. Spatafora, M. Catherine Aime, Igor V. Grigoriev, et al.
Microbiology Spectrum (2017) Vol. 5, Iss. 5
Open Access | Times Cited: 231
Toward a Fully Resolved Fungal Tree of Life
Timothy Y. James, Jason Stajich, Chris Todd Hittinger, et al.
Annual Review of Microbiology (2020) Vol. 74, Iss. 1, pp. 291-313
Open Access | Times Cited: 210
BUSCO applications from quality assessments to gene prediction and phylogenomics
Robert M. Waterhouse, Mathieu Seppey, Felipe A. Simão, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2017)
Open Access | Times Cited: 174
What are fungal species and how to delineate them?
K. W. Thilini Chethana, Ishara S. Manawasinghe, Vedprakash G. Hurdeal, et al.
Fungal Diversity (2021) Vol. 109, Iss. 1, pp. 1-25
Closed Access | Times Cited: 167
Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names
Alexander Douglass, Benjamin Offei, Stephanie Braun‐Galleani, et al.
PLoS Pathogens (2018) Vol. 14, Iss. 7, pp. e1007138-e1007138
Open Access | Times Cited: 166
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
Jacob L. Steenwyk, Thomas J. Buida, Abigail L. LaBella, et al.
Bioinformatics (2021) Vol. 37, Iss. 16, pp. 2325-2331
Open Access | Times Cited: 152
Incongruence in the phylogenomics era
Jacob L. Steenwyk, Yuanning Li, Xiaofan Zhou, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 12, pp. 834-850
Closed Access | Times Cited: 104
A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina
Marizeth Groenewald, Chris Todd Hittinger, Konstanze Bensch, et al.
Studies in Mycology (2023) Vol. 105, Iss. 1, pp. 1-22
Open Access | Times Cited: 56
Macroevolutionary dynamics of gene family gain and loss along multicellular eukaryotic lineages
Mirjana Domazet-Lošo, Tin Široki, Korina Šimičević, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 17
The promise and pitfalls of synteny in phylogenomics
Jacob L. Steenwyk, Nicole King
PLoS Biology (2024) Vol. 22, Iss. 5, pp. e3002632-e3002632
Open Access | Times Cited: 17
Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets
Xiaofan Zhou, Xing‐Xing Shen, Chris Todd Hittinger, et al.
Molecular Biology and Evolution (2017) Vol. 35, Iss. 2, pp. 486-503
Open Access | Times Cited: 165
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, et al.
mBio (2019) Vol. 10, Iss. 4
Open Access | Times Cited: 137
A Phylogenomic Supertree of Birds
Rebecca T. Kimball, Carl H. Oliveros, Ning Wang, et al.
Diversity (2019) Vol. 11, Iss. 7, pp. 109-109
Open Access | Times Cited: 134
Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
Jacob L. Steenwyk, Dana A. Opulente, Jacek Kominek, et al.
PLoS Biology (2019) Vol. 17, Iss. 5, pp. e3000255-e3000255
Open Access | Times Cited: 125
Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota
Xing‐Xing Shen, Jacob L. Steenwyk, Abigail L. LaBella, et al.
Science Advances (2020) Vol. 6, Iss. 45
Open Access | Times Cited: 115
Evolutionary Conservation of the Components in the TOR Signaling Pathways
Hisashi Tatebe, Kazuhiro Shiozaki
Biomolecules (2017) Vol. 7, Iss. 4, pp. 77-77
Open Access | Times Cited: 114
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