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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Overview of Virus Metagenomic Classification Methods and Their Biological Applications
Sam Nooij, Dennis Schmitz, Harry Vennema, et al.
Frontiers in Microbiology (2018) Vol. 9
Open Access | Times Cited: 118

Showing 1-25 of 118 citing articles:

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families
Joan Carles Pons, David Páez-Espino, Gabriel Riera, et al.
Bioinformatics (2021) Vol. 37, Iss. 13, pp. 1805-1813
Open Access | Times Cited: 84
Molecular diagnostic assays for COVID-19: an overview
Parham Habibzadeh, Mohammad Mofatteh, Mohammad Silawi, et al.
Critical Reviews in Clinical Laboratory Sciences (2021) Vol. 58, Iss. 6, pp. 385-398
Open Access | Times Cited: 68
The Human Virome: Viral Metagenomics, Relations with Human Diseases, and Therapeutic Applications
Geng-Hao Bai, Sheng‐Chieh Lin, Yi‐Hsiang Hsu, et al.
Viruses (2022) Vol. 14, Iss. 2, pp. 278-278
Open Access | Times Cited: 66
Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting
Jutte J.C. de Vries, Julianne R. Brown, Natacha Couto, et al.
Journal of Clinical Virology (2021) Vol. 138, pp. 104812-104812
Open Access | Times Cited: 63
Temporal landscape of human gut RNA and DNA virome in SARS-CoV-2 infection and severity
Tao Zuo, Qin Liu, Fen Zhang, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 58
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J. Piedade, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 15
Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA
Jaebeom Kim, Martin Steinegger
Nature Methods (2024) Vol. 21, Iss. 6, pp. 971-973
Open Access | Times Cited: 9
A Review on Viral Metagenomics in Extreme Environments
Sonia Dávila‐Ramos, Hugo G. Castelán‐Sánchez, Liliana Martínez-Ávila, et al.
Frontiers in Microbiology (2019) Vol. 10
Open Access | Times Cited: 71
Full-length sequencing of circular DNA viruses and extrachromosomal circular DNA using CIDER-Seq
Devang Mehta, Luc Cornet, Matthias Hirsch‐Hoffmann, et al.
Nature Protocols (2020) Vol. 15, Iss. 5, pp. 1673-1689
Closed Access | Times Cited: 69
Virus Metagenomics in Farm Animals: A Systematic Review
Kirsty Kwok, David F. Nieuwenhuijse, My V. T. Phan, et al.
Viruses (2020) Vol. 12, Iss. 1, pp. 107-107
Open Access | Times Cited: 67
Viruses of Eukaryotic Algae: Diversity, Methods for Detection, and Future Directions
Samantha R Coy, Eric R. Gann, Helena L. Pound, et al.
Viruses (2018) Vol. 10, Iss. 9, pp. 487-487
Open Access | Times Cited: 63
Detecting viral sequences in NGS data
Paul G. Cantalupo, James M. Pipas
Current Opinion in Virology (2019) Vol. 39, pp. 41-48
Closed Access | Times Cited: 62
Current Trends in Diagnostics of Viral Infections of Unknown Etiology
Daniel Kiselev, Alina D. Matsvay, И. А. Абрамов, et al.
Viruses (2020) Vol. 12, Iss. 2, pp. 211-211
Open Access | Times Cited: 62
Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system
Will A. Overholt, Martin Hölzer, Patricia Geesink, et al.
Environmental Microbiology (2020) Vol. 22, Iss. 9, pp. 4000-4013
Open Access | Times Cited: 62
Next-Generation Metagenomics: Methodological Challenges and Opportunities
Ilaria Laudadio, Valerio Fulci, Laura Stronati, et al.
OMICS A Journal of Integrative Biology (2019) Vol. 23, Iss. 7, pp. 327-333
Open Access | Times Cited: 60
High-throughput sequencing (HTS) for the analysis of viral populations
Marcos Pérez‐Losada, Miguel Arenas, Juan Carlos Galán, et al.
Infection Genetics and Evolution (2020) Vol. 80, pp. 104208-104208
Closed Access | Times Cited: 56
Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples
Jutte J.C. de Vries, Julianne R. Brown, Nicole Fischer, et al.
Journal of Clinical Virology (2021) Vol. 141, pp. 104908-104908
Open Access | Times Cited: 50
Perspective on taxonomic classification of uncultivated viruses
Bas E. Dutilh, Arvind Varsani, Yigang Tong, et al.
Current Opinion in Virology (2021) Vol. 51, pp. 207-215
Open Access | Times Cited: 47
Challenges and Solutions to Viral Diseases of Finfish in Marine Aquaculture
Kizito K. Mugimba, Denis K. Byarugaba, Stephen Mutoloki, et al.
Pathogens (2021) Vol. 10, Iss. 6, pp. 673-673
Open Access | Times Cited: 46
Contamination Issue in Viral Metagenomics: Problems, Solutions, and Clinical Perspectives
Henryk Jurasz, Tomasz Pawłowski, Karol Perlejewski
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 46
MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data
Mattia Pandolfo, Andrea Telatin, Gioele Lazzari, et al.
mSystems (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 33
Bioinformatic Tools for NGS-Based Metagenomics to Improve the Clinical Diagnosis of Emerging, Re-Emerging and New Viruses
Marta Ibañez-Lligoña, Sergi Colomer-Castell, Alejandra González-Sánchez, et al.
Viruses (2023) Vol. 15, Iss. 2, pp. 587-587
Open Access | Times Cited: 22
Critical issues in application of molecular methods to environmental virology
Ibrahim Ahmed Hamza, Kyle Bibby
Journal of Virological Methods (2019) Vol. 266, pp. 11-24
Open Access | Times Cited: 47
virMine: automated detection of viral sequences from complex metagenomic samples
Andrea Garretto, Thomas Hatzopoulos, Catherine Putonti
PeerJ (2019) Vol. 7, pp. e6695-e6695
Open Access | Times Cited: 46
Enteric Virome and Carcinogenesis in the Gut
Cade Emlet, Mack T. Ruffin, Regina Lamendella
Digestive Diseases and Sciences (2020) Vol. 65, Iss. 3, pp. 852-864
Closed Access | Times Cited: 40
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