Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Evaluation of computational phage detection tools for metagenomic datasets
Kenneth Schackart, Jessica B. Graham, Alise J. Ponsero, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 18

Showing 18 citing articles:

Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J. Piedade, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 13
ProkBERT family: genomic language models for microbiome applications
Balázs Ligeti, István Szepesi-Nagy, Babett Bodnár, et al.
Frontiers in Microbiology (2024) Vol. 14
Open Access | Times Cited: 8
ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis
Jinlong Ru, Mohammadali Khan Mirzaei, Jinling Xue, et al.
Gut Microbes (2023) Vol. 15, Iss. 1
Open Access | Times Cited: 14
Exploring deep learning in phage discovery and characterization
Malena Regina De Freitas E SILVA, Vitória Yumi Uetuki Nicoleti, Bárbara Rodrigues, et al.
Virology (2025), pp. 110559-110559
Closed Access
The Aggregated Gut Viral Catalogue (AVrC): A unified resource for exploring the viral diversity of the human gut
Anastasia Galperina, Gabriele Andrea Lugli, Christian Milani, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 5, pp. e1012268-e1012268
Open Access
Survival and Spread of EngineeredMycobacterium smegmatisand Associated Mycobacteriophage in Soil Microcosms
Megan S. Fleeharty, Kate B.R. Carline, Bilalay V. Tchadi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Benchmarking Bioinformatic Virus Identification Tools Using Real-World Metagenomic Data across Biomes
Ling-Yi Wu, Nikolaos Pappas, Yasas Wijesekara, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny
Evgenia Dikareva, Dollwin Matharu, Emilia Lahtinen, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 7
Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita
Melissa Stante, Nancy Weiland‐Bräuer, Urska Repnik, et al.
Viruses (2023) Vol. 15, Iss. 7, pp. 1525-1525
Open Access | Times Cited: 5
Environmental DNA transformation resulted in an active phage in Escherichia coli
Abdulkerim Karaynir, Bülent Bozdoğan, Hanife Salih
PLoS ONE (2023) Vol. 18, Iss. 10, pp. e0292933-e0292933
Open Access | Times Cited: 4
VIGA: a one-stop tool for eukaryotic virus identification and genome assembly from next-generation-sequencing data
Ping Fu, Yifan Wu, Zhiyuan Zhang, et al.
Briefings in Bioinformatics (2023) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Comparative Analyses of Bacteriophage Genomes
F. Rossi, Vinicius Sousa Flores, Guillermo Uceda-Campos, et al.
Methods in molecular biology (2024), pp. 427-453
Closed Access | Times Cited: 1
Identification and Characterization of Novel Metagenome Assembled Uncultivated Virus Genomes from Human Gut
Kanchan Bhardwaj, Niharika Niharika, Anjali Garg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
The Aggregated Gut Viral Catalogue (AVrC): A Unified Resource for Exploring the Viral Diversity of the Human Gut
Anastasia Galperina, Gabriele Andrea Lugli, Christian Milani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Jaeger: an accurate and fast deep-learning tool to detect bacteriophage sequences
Yasas Wijesekara, Ling-Yi Wu, Rick Beeloo, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
ProkBERT PhaStyle: Accurate Phage Lifestyle Prediction with Pretrained Genomic Language Models
Julianna Juhász, Bodnár Babett, János Juhász, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Four novel Caudoviricetes bacteriophages isolated from Baltic Sea water infect colonizers of Aurelia aurita
Melissa Stante, Nancy Weiland‐Bräuer, Urska Repnik, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
VIGA: an one-stop tool for eukaryotic Virus Identification and Genome Assembly from next-generation-sequencing data
Ping Fu, Yifan Wu, Zhiyuan Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Recuperação e caracterização de genomas de bacteriófagos a partir de metagenomas de compostagem
Vinicius Sousa Flores
(2023)
Open Access
ProkBERT Family: Genomic Language Models for Microbiome Applications
Balázs Ligeti, István Szepesi-Nagy, Babett Bodnár, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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