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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Large-Scale Conformational Changes and Protein Function: Breaking the in silico Barrier
Laura Orellana
Frontiers in Molecular Biosciences (2019) Vol. 6
Open Access | Times Cited: 100

Showing 1-25 of 100 citing articles:

Structure determination of high-energy states in a dynamic protein ensemble
J. Stiller, Renee Otten, Daniel Häußinger, et al.
Nature (2022) Vol. 603, Iss. 7901, pp. 528-535
Open Access | Times Cited: 75
Applications of fluorescence spectroscopy in protein conformational changes and intermolecular contacts
Fábio Henrique dos Santos Rodrigues, Gonzalo García Delgado, Thyerre Santana da Costa, et al.
BBA Advances (2023) Vol. 3, pp. 100091-100091
Open Access | Times Cited: 74
Harnessing Conformational Plasticity to Generate Designer Enzymes
Rory Crean, Jasmine M. Gardner, Shina Caroline Lynn Kamerlin
Journal of the American Chemical Society (2020) Vol. 142, Iss. 26, pp. 11324-11342
Open Access | Times Cited: 116
Coupling Molecular Dynamics and Deep Learning to Mine Protein Conformational Space
Matteo T. Degiacomi
Structure (2019) Vol. 27, Iss. 6, pp. 1034-1040.e3
Open Access | Times Cited: 104
Structure‐Based Drug Discovery with Deep Learning**
Rıza Özçelik, Derek van Tilborg, José Jiménez-Luna, et al.
ChemBioChem (2023) Vol. 24, Iss. 13
Open Access | Times Cited: 37
Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting
Stefania Torino, Mugdha Dhurandhar, Annelore Stroobants, et al.
Nature Methods (2023) Vol. 20, Iss. 9, pp. 1400-1408
Open Access | Times Cited: 31
Applications of Molecular Dynamics Simulations in Drug Discovery
Sara AlRawashdeh, Khaled Barakat
Methods in molecular biology (2023), pp. 127-141
Closed Access | Times Cited: 29
Molecular Dynamics Simulations and Diversity Selection by Extended Continuous Similarity Indices
Anita Rácz, Levente M. Mihalovits, Dávid Bajusz, et al.
Journal of Chemical Information and Modeling (2022) Vol. 62, Iss. 14, pp. 3415-3425
Open Access | Times Cited: 37
Mapping the conformational energy landscape of Abl kinase using ClyA nanopore tweezers
Fanjun Li, Monifa A. Fahie, Kaitlyn M. Gilliam, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 30
Bioinspired Catalyst Design Principles: Progress in Emulating Properties of Enzymes in Synthetic Catalysts
Bojana Ginovska, Oliver Y. Gutiérrez, Abhi Karkamkar, et al.
ACS Catalysis (2023) Vol. 13, Iss. 18, pp. 11883-11901
Open Access | Times Cited: 22
Machine Learning Generation of Dynamic Protein Conformational Ensembles
Lie Zheng, Shrishti Barethiya, Erik B. Nordquist, et al.
Molecules (2023) Vol. 28, Iss. 10, pp. 4047-4047
Open Access | Times Cited: 18
Computational modeling of cardiac electrophysiology and arrhythmogenesis: toward clinical translation
Natalia A. Trayanova, Aurore Lyon, Julie K. Shade, et al.
Physiological Reviews (2023) Vol. 104, Iss. 3, pp. 1265-1333
Open Access | Times Cited: 18
Dynamical nonequilibrium molecular dynamics reveals the structural basis for allostery and signal propagation in biomolecular systems
A. Sofia F. Oliveira, Giovanni Ciccotti, Shozeb Haider, et al.
The European Physical Journal B (2021) Vol. 94, Iss. 7
Open Access | Times Cited: 40
Allosteric Switching of Calmodulin in a Mycobacterium smegmatis porin A (MspA) Nanopore‐Trap
Yao Liu, Tiezheng Pan, Kefan Wang, et al.
Angewandte Chemie International Edition (2021) Vol. 60, Iss. 44, pp. 23863-23870
Closed Access | Times Cited: 36
Protein scaffolds: A tool for multi-enzyme assembly
Shubhada Gad, Sonal Ayakar
Biotechnology Reports (2021) Vol. 32, pp. e00670-e00670
Open Access | Times Cited: 36
Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods
Burak Kaynak, James Krieger, Bálint Dudás, et al.
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 23
Tackling Hysteresis in Conformational Sampling: How to Be Forgetful with MEMENTO
Simon M Lichtinger, Philip C. Biggin
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 12, pp. 3705-3720
Open Access | Times Cited: 13
The physical logic of protein machines
J. Michael McBride, Tsvi Tlusty
Journal of Statistical Mechanics Theory and Experiment (2024) Vol. 2024, Iss. 2, pp. 024001-024001
Open Access | Times Cited: 5
Dynamical nonequilibrium molecular dynamics simulations reveal allosteric networks, signal transduction mechanisms, and sites associated with drug resistance in biomolecular systems
Balazs Balega, Michael Beer, James Spencer, et al.
Molecular Physics (2024)
Closed Access | Times Cited: 5
Molecular dynamics simulations: Principles, methods, and applications in protein conformational dynamics
Aditya K. Padhi, Matej Janežič, Kam Y. J. Zhang
Elsevier eBooks (2022), pp. 439-454
Closed Access | Times Cited: 19
Phenolic compounds as α-glucosidase inhibitors: a docking and molecular dynamics simulation study
Ananta Swargiary, Mritunjoy Kumar Roy, Shafi Mahmud
Journal of Biomolecular Structure and Dynamics (2022) Vol. 41, Iss. 9, pp. 3862-3871
Closed Access | Times Cited: 19
A new inactive conformation of SARS-CoV-2 main protease
Emanuele Fornasier, Maria Ludovica Macchia, Gabriele Giachin, et al.
Acta Crystallographica Section D Structural Biology (2022) Vol. 78, Iss. 3, pp. 363-378
Open Access | Times Cited: 19
Computational Analysis of CC2D1A Missense Mutations: Insight into Protein Structure and Interaction Dynamics
Anwar Abuelrub, İsmail Erol, Nurdeniz Nalbant Bingol, et al.
ACS Chemical Neuroscience (2025)
Open Access
FEPrepare: A Web-Based Tool for Automating the Setup of Relative Binding Free Energy Calculations
Stamatia Zavitsanou, Alexandros Tsengenes, Michail Papadourakis, et al.
Journal of Chemical Information and Modeling (2021) Vol. 61, Iss. 9, pp. 4131-4138
Closed Access | Times Cited: 24
Dynamics of MHC-I molecules in the antigen processing and presentation pathway
Hau V. Truong, Nikolaos G. Sgourakis
Current Opinion in Immunology (2021) Vol. 70, pp. 122-128
Open Access | Times Cited: 23
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