Open Access Helper

OpenAlex Citation Counts

OpenAlex Citations Logo

OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes
Mohamad Harastani, Mikhail Eltsov, Amélie Leforestier, et al.
Frontiers in Molecular Biosciences (2021) Vol. 8
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

EMDB—the Electron Microscopy Data Bank
Jack Turner, Sanja Abbott, Neli Fonseca, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D456-D465
Open Access | Times Cited: 51
Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN
Barrett M. Powell, Joseph H. Davis
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1525-1536
Closed Access | Times Cited: 24
An image processing pipeline for electron cryo‐tomography in RELION‐5
Alister Burt, Bogdan Toader, Rangana Warshamanage, et al.
FEBS Open Bio (2024) Vol. 14, Iss. 11, pp. 1788-1804
Open Access | Times Cited: 24
MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation
Rémi Vuillemot, Alex Mirzaei, Mohamad Harastani, et al.
Journal of Molecular Biology (2023) Vol. 435, Iss. 9, pp. 167951-167951
Open Access | Times Cited: 26
Cryo-Electron Tomography: The Resolution Revolution and a Surge of In Situ Virological Discoveries
Ye Hong, Yutong Song, Zheyuan Zhang, et al.
Annual Review of Biophysics (2023) Vol. 52, Iss. 1, pp. 339-360
Open Access | Times Cited: 23
CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells
Ramya Rangan, Ryan W. Feathers, Sagar Khavnekar, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1537-1545
Closed Access | Times Cited: 12
An image processing pipeline for electron cryo-tomography in RELION-5
Alister Burt, Bogdan Toader, Rangana Warshamanage, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 11
ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation
J. Jiménez de la Morena, Pablo Conesa, Yunior C. Fonseca, et al.
Journal of Structural Biology (2022) Vol. 214, Iss. 3, pp. 107872-107872
Open Access | Times Cited: 34
DeepHEMNMA: ResNet-based hybrid analysis of continuous conformational heterogeneity in cryo-EM single particle images
Ilyes Hamitouche, Slavica Jonić
Frontiers in Molecular Biosciences (2022) Vol. 9
Open Access | Times Cited: 24
Learning structural heterogeneity from cryo-electron sub-tomograms with tomoDRGN
Barrett M. Powell, Joseph H. Davis
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
A method for restoring signals and revealing individual macromolecule states in cryo-ET, REST
Haonan Zhang, Yan Li, Yanan Liu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 14
Revealing biomolecular structure and motion with neural ab initio cryo-EM reconstruction
Axel Levy, Michal R. Grzadkowski, Frédéric Poitevin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Deep reconstructing generative networks for visualizing dynamic biomolecules inside cells
Ramya Rangan, Sagar Khavnekar, Adam Lerer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 12
Real-space heterogeneous reconstruction, refinement, and disentanglement of CryoEM conformational states with HetSIREN
David Herreros, Carlos P. Mata, Chari M. Noddings, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion
David Střelák, Amaya Jiménez-Moreno, José Luis Vilas, et al.
Molecules (2021) Vol. 26, Iss. 20, pp. 6224-6224
Open Access | Times Cited: 24
Cryo-electron tomography and deep learning denoising reveal native chromatin landscapes of interphase nuclei
Fadwa Fatmaoui, Pascal Carrivain, Diana Grewe, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 17
ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data
Mohamad Harastani, Rémi Vuillemot, Ilyes Hamitouche, et al.
Journal of Structural Biology (2022) Vol. 214, Iss. 4, pp. 107906-107906
Open Access | Times Cited: 17
TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow
Mohamad Harastani, Mikhail Eltsov, Amélie Leforestier, et al.
Journal of Molecular Biology (2021) Vol. 434, Iss. 2, pp. 167381-167381
Open Access | Times Cited: 19
Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0
James Krieger, Carlos Óscar S. Sorzano, J.M. Carazo, et al.
Acta Crystallographica Section D Structural Biology (2022) Vol. 78, Iss. 4, pp. 399-409
Open Access | Times Cited: 14
Integrating model simulation tools and cryo‐electron microscopy
Joseph G. Beton, Tristan Cragnolini, Manaz Kaleel, et al.
Wiley Interdisciplinary Reviews Computational Molecular Science (2022) Vol. 13, Iss. 3
Open Access | Times Cited: 14
Are extraordinary nucleosome structures more ordinary than we thought?
Claris Y. Y. Chong, Lu Gan
Chromosoma (2023) Vol. 132, Iss. 3, pp. 139-152
Closed Access | Times Cited: 7
MDTOMO method for continuous conformational variability analysis in cryo electron subtomograms based on molecular dynamics simulations
Rémi Vuillemot, Isabelle Rouiller, Slavica Jonić
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 7
3D animation as a tool for integrative modeling of dynamic molecular mechanisms
Margot Riggi, Rachel M. Torrez, Janet Iwasa
Structure (2024) Vol. 32, Iss. 2, pp. 122-130
Closed Access | Times Cited: 2
DUAL: deep unsupervised simultaneous simulation and denoising for cryo-electron tomography
Xiangrui Zeng, Yizhe Ding, Yueqian Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Real-space heterogeneous reconstruction, refinement, and disentanglement of CryoEM conformational states with HetSIREN
David Herreros, Carlos P. Mata, Chari M. Noddings, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Page 1 - Next Page

Scroll to top