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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Evaluation of Seven Different RNA-Seq Alignment Tools Based on Experimental Data from the Model Plant Arabidopsis thaliana
Stephanie Schaarschmidt, Axel Fischer, Ellen Zuther, et al.
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 5, pp. 1720-1720
Open Access | Times Cited: 40

Showing 1-25 of 40 citing articles:

Systematic comparison and assessment of RNA-seq procedures for gene expression quantitative analysis
Luís A. Corchete, Elizabeta A. Rojas, Diego Alonso‐López, et al.
Scientific Reports (2020) Vol. 10, Iss. 1
Open Access | Times Cited: 182
A simple guide to de novo transcriptome assembly and annotation
Venket Raghavan, Louis Kraft, Fantin Mesny, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 101
A comprehensive workflow for optimizing RNA-seq data analysis
Jiang Gao, Juan-Yu Zheng, Shu-Ning Ren, et al.
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 12
Pan-cancer discovery of somatic mutations from RNA sequencing data
Gongyu Tang, Xinyi Liu, Minsu Cho, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 7
Evaluation of variant calling tools for large plant genome re-sequencing
Zhen Yao, Frank M. You, Amidou N’Diaye, et al.
BMC Bioinformatics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 42
NASA GeneLab RNA-seq consensus pipeline: Standardized processing of short-read RNA-seq data
Eliah Overbey, Amanda Saravia-Butler, Zhe Zhang, et al.
iScience (2021) Vol. 24, Iss. 4, pp. 102361-102361
Open Access | Times Cited: 38
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Marie Lataretu, Martin Hölzer
Genes (2020) Vol. 11, Iss. 12, pp. 1487-1487
Open Access | Times Cited: 32
Genome-Wide Development and Validation of Cost-Effective KASP Marker Assays for Genetic Dissection of Heat Stress Tolerance in Maize
A. B. Jagtap, Yogesh Vikal, Gurmukh S. Johal
International Journal of Molecular Sciences (2020) Vol. 21, Iss. 19, pp. 7386-7386
Open Access | Times Cited: 31
The effect of fatty acid binding protein-3 exposure on endothelial transcriptomics
Hien C. Nguyen, Aman Singh, Christina A. Castellani, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
A transcriptome software comparison for the analyses of treatments expected to give subtle gene expression responses
Cung Nawl Thawng, Geoffrey B. Smith
BMC Genomics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 12
A method for simultaneous detection of small and long RNA biotypes by ribodepleted RNA-Seq
Nikita Potemkin, Sophie Cawood, Jackson Treece, et al.
Scientific Reports (2022) Vol. 12, Iss. 1
Open Access | Times Cited: 11
Working with Omics Data: An Interdisciplinary Challenge at the Crossroads of Biology and Computer Science
Thibault Poinsignon, Pierre Poulain, Mélina Gallopin, et al.
Neuromethods (2023), pp. 313-330
Open Access | Times Cited: 6
Transcriptome software results show significant variation among different commercial pipelines
Cung Nawl Thawng, Geoffrey B. Smith
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 6
De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms – a brief guide
Daniel J. Jackson, Nicolas Cerveau, Nico Posnien
Frontiers in Zoology (2024) Vol. 21, Iss. 1
Open Access | Times Cited: 2
Diverse genetic alteration dysregulates neuropeptide and intracellular signalling in the suprachiasmatic nuclei
Lucy Curtis, Hugh D. Piggins
European Journal of Neuroscience (2024) Vol. 60, Iss. 2, pp. 3921-3945
Open Access | Times Cited: 2
Broad misappropriation of developmental splicing profile by cancer in multiple organs
Arashdeep Singh, Arati Rajeevan, Vishaka Gopalan, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 8
Alternative Transcripts Diversify Genome Function for Phenome Relevance to Health and Diseases
Shane A. Carrion, Jennifer J. Michal, Zhihua Jiang
Genes (2023) Vol. 14, Iss. 11, pp. 2051-2051
Open Access | Times Cited: 4
PABLOG: a Primer Analysis tool using a Bee‐Like approach on Orthologous Genes
Michele Ferrigno, Paola Frazzetto, Andrey D. Prjibelski, et al.
Physiologia Plantarum (2024) Vol. 176, Iss. 3
Closed Access | Times Cited: 1
Protocol for transcriptome-wide mapping of small-molecule RNA-binding sites in live cells
Yuquan Tong, Patrick R. A. Zanon, Xueyi Yang, et al.
STAR Protocols (2024) Vol. 5, Iss. 3, pp. 103271-103271
Open Access | Times Cited: 1
Maternal Undernutrition Affects Fetal Thymus DNA Methylation, Gene Expression, and, Thereby, Metabolism and Immunopoiesis in Wagyu (Japanese Black) Cattle
Ouanh Phomvisith, Susumu Muroya, Konosuke OTOMARU, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 17, pp. 9242-9242
Open Access | Times Cited: 1
Comparative Analysis Based on Transcriptomics and Metabolomics Data Reveal Differences between Emmer and Durum Wheat in Response to Nitrogen Starvation
Romina Beleggia, Nooshin Omranian, Yan Holtz, et al.
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 9, pp. 4790-4790
Open Access | Times Cited: 9
A Chronological Study on Grapevine Leafroll-Associated Virus 2 in Australia
Nuredin Habili, Qi Wu, Amy Rinaldo, et al.
Viruses (2023) Vol. 15, Iss. 5, pp. 1105-1105
Open Access | Times Cited: 3
Trends and Applications of Omics Technologies to Functional Characterisation of Enzymes and Protein Metabolites Produced by Fungi
Grace N. Ijoma, Sylvie M. Heri, Tonderayi S. Matambo, et al.
Journal of Fungi (2021) Vol. 7, Iss. 9, pp. 700-700
Open Access | Times Cited: 6
Contract-Driven Design of Scientific Data Analysis Workflows
Anh Duc Vu, Jan Arne Sparka, Ninon De Mecquenem, et al.
(2023), pp. 1-10
Closed Access | Times Cited: 2
NASA GeneLab RNA-Seq Consensus Pipeline: Standardized Processing of Short-Read RNA-Seq Data
Eliah Overbey, Amanda Saravia-Butler, Zhe Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 4
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