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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Computer Simulations and Network-Based Profiling of Binding and Allosteric Interactions of SARS-CoV-2 Spike Variant Complexes and the Host Receptor: Dissecting the Mechanistic Effects of the Delta and Omicron Mutations
Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, et al.
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 8, pp. 4376-4376
Open Access | Times Cited: 18

Showing 18 citing articles:

Molecular insights into the adaptive evolution of SARS-CoV-2 spike protein
Zhuocheng Yao, Lin Zhang, Yuange Duan, et al.
Journal of Infection (2024) Vol. 88, Iss. 3, pp. 106121-106121
Open Access | Times Cited: 17
Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
Viruses (2023) Vol. 15, Iss. 5, pp. 1143-1143
Open Access | Times Cited: 22
Ensemble-Based Mutational Profiling and Network Analysis of the SARS-CoV-2 Spike Omicron XBB Lineages for Interactions with the ACE2 Receptor and Antibodies: Cooperation of Binding Hotspots in Mediating Epistatic Couplings Underlies Binding Mechanism and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 8, pp. 4281-4281
Open Access | Times Cited: 8
Probing conformational landscapes of binding and allostery in the SARS-CoV-2 omicron variant complexes using microsecond atomistic simulations and perturbation-based profiling approaches: hidden role of omicron mutations as modulators of allosteric signaling and epistatic relationships
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 32, pp. 21245-21266
Open Access | Times Cited: 14
Probing Mechanisms of Binding and Allostery in the SARS-CoV-2 Spike Omicron Variant Complexes with the Host Receptor: Revealing Functional Roles of the Binding Hotspots in Mediating Epistatic Effects and Communication with Allosteric Pockets
Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, et al.
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 19, pp. 11542-11542
Open Access | Times Cited: 20
Machine learning and protein allostery
Sian Xiao, Gennady M. Verkhivker, Peng Tao
Trends in Biochemical Sciences (2022) Vol. 48, Iss. 4, pp. 375-390
Open Access | Times Cited: 20
Unraveling the binding mechanisms of SARS-CoV-2 variants through molecular simulations
Shin‐Pon Ju, Yung-Cheng Yang, Hsing‐Yin Chen
Heliyon (2024) Vol. 10, Iss. 5, pp. e27193-e27193
Open Access | Times Cited: 4
Regional Dynamics and Mechanisms Behind SARS-CoV-2 XDV.1 Prevalence in Chongqing via Genomic Surveillance and Molecular Insights
Yan Jin, Fangyuan Liu, Sihan Hu, et al.
Virus Research (2025), pp. 199562-199562
Open Access
Physicochemical effects of emerging exchanges on the spike protein's RBM of the SARS-CoV-2 Omicron subvariants BA.1-BA.5 and its influence on the biological properties and attributes developed by these subvariants
Robério Amorim de Almeida Pondé
Virology (2023) Vol. 587, pp. 109850-109850
Closed Access | Times Cited: 9
Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages : Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Coarse-Grained Molecular Simulations and Ensemble-Based Mutational Profiling of Protein Stability in the Different Functional Forms of the SARS-CoV-2 Spike Trimers: Balancing Stability and Adaptability in BA.1, BA.2 and BA.2.75 Variants
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 7, pp. 6642-6642
Open Access | Times Cited: 5
Microarray Profiling of Vaccination-Induced Antibody Responses to SARS-CoV-2 Variants of Interest and Concern
Julia Svetlova, Dmitry Gustin, Valentin A. Manuvera, et al.
International Journal of Molecular Sciences (2022) Vol. 23, Iss. 21, pp. 13220-13220
Open Access | Times Cited: 8
The Diverse Nature of the Molecular Interactions That Govern the COV-2 Variants’ Cell Receptor Affinity Ranking and Its Experimental Variability
Fredy Sussman, Daniel S. Villaverde
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 5, pp. 2585-2585
Open Access | Times Cited: 1
Complementary Pocket and Network-Based Approach to Search for Spike Protein Allosteric Pocket Sites
Ronny L. Cheng, Jerwin C. Quirante, Louise Erika Z. Vargas, et al.
ACS Omega (2023) Vol. 8, Iss. 48, pp. 45313-45325
Open Access | Times Cited: 3
Coarse-Grained Molecular Simulations and Ensemble-Based Mutational Profiling of Protein Stability in the Different Functional Forms of the SARS-CoV-2 Spike Trimers : Balancing Stability and Adaptability in BA.1, BA.2 and BA.2.75 Variants
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Integrating Conformational Dynamics and Perturbation-Based Network Modeling for Mutational Profiling of Binding and Allostery in the SARS-CoV-2 Spike Variant Complexes with Antibodies: Balancing Local and Global Determinants of Mutational Escape Mechanisms
Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, et al.
Biomolecules (2022) Vol. 12, Iss. 7, pp. 964-964
Open Access | Times Cited: 2
Probing Conformational Landscapes of Binding and Allostery in the SARS-CoV-2 Omicron Variant Complexes Using Microsecond Atomistic Simulations and Perturbation-Based Profiling Approaches: Hidden Role of Omicron Mutations as Modulators of Allosteric Signaling and Epistatic Relationships
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Atomistic Simulations and Network-Based Energetic Profiling of Binding and Allostery in the SARS-CoV-2 Spike Omicron BA.1, BA.1.1, BA.2 and BA.3 Subvariant Complexes with the Host Receptor: Revealing Hidden Functional Roles of the Binding Hotspots in Mediating Epistatic Effects and Long-Range Communication with Allosteric Pockets
Gennady M. Verkhivker, Steve Agajanian, Ryan Kassab, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
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