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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Applications of Molecular Dynamics Simulation in Protein Study
Siddharth Sinha, Benjamin Tam, San Ming Wang
Membranes (2022) Vol. 12, Iss. 9, pp. 844-844
Open Access | Times Cited: 66

Showing 1-25 of 66 citing articles:

Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways
David Aranda-García, Tomasz Maciej Stępniewski, Mariona Torrens‐Fontanals, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
From byte to bench to bedside: molecular dynamics simulations and drug discovery
M.W. Ahmed, Alex M. Maldonado, Jacob D. Durrant
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 23
In silico identification and molecular mechanism of novel egg white-derived tyrosinase inhibitory peptides
Zhipeng Yu, Li Fu, Qian Zhang, et al.
Food Bioscience (2024) Vol. 57, pp. 103567-103567
Closed Access | Times Cited: 14
PLAS-20k: Extended Dataset of Protein-Ligand Affinities from MD Simulations for Machine Learning Applications
Divya B. Korlepara, C. S. Vasavi, Rakesh Srivastava, et al.
Scientific Data (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 11
IN SILICO EXPLORATION OF BERBERINE AS A POTENTIAL WOUND HEALING AGENT VIA NETWORK PHARMACOLOGY, MOLECULAR DOCKING, AND MOLECULAR DYNAMICS SIMULATION
Rahul Ashok Sachdeo, Chitra Khanwelkar, Amol Shete
International Journal of Applied Pharmaceutics (2024), pp. 188-194
Open Access | Times Cited: 11
Computer-Aided Semi-Rational Design to Enhance the Activity of l-Sorbosone Dehydrogenase from Gluconobacter oxidans WSH-004
Dong Li, Xinglong Wang, Huo Lin, et al.
Journal of Agricultural and Food Chemistry (2024) Vol. 72, Iss. 19, pp. 10995-11001
Closed Access | Times Cited: 7
ELViM: Exploring Biomolecular Energy Landscapes through Multidimensional Visualization
Rafael Giordano Viegas, Ingrid B. S. Martins, Murilo N. Sanches, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 8, pp. 3443-3450
Open Access | Times Cited: 6
Computational toolbox for the analysis of protein–glycan interactions
Ferran Nieto-Fabregat, María Pia Lenza, Angela Marseglia, et al.
Beilstein Journal of Organic Chemistry (2024) Vol. 20, pp. 2084-2107
Open Access | Times Cited: 5
Cell-free protein synthesis system for bioanalysis: Advances in methods and applications
Yanqiu Gu, Fang Fan, Yue Liu, et al.
TrAC Trends in Analytical Chemistry (2023) Vol. 161, pp. 117015-117015
Closed Access | Times Cited: 12
Spidroins under the Influence of Alcohol: Effect of Ethanol on Secondary Structure and Molecular Level Solvation of Silk-Like Proteins
Dmitry Tolmachev, Maaria Malkamäki, Markus B. Linder, et al.
Biomacromolecules (2023) Vol. 24, Iss. 12, pp. 5638-5653
Open Access | Times Cited: 11
Advanced computational approaches to understand protein aggregation
Deepshikha Ghosh, Anushka Biswas, Mithun Radhakrishna
Biophysics Reviews (2024) Vol. 5, Iss. 2
Closed Access | Times Cited: 4
Investigation of the MDM2-binding potential of de novo designed peptides using enhanced sampling simulations
Olanrewaju Ayodeji Durojaye, Abeeb Abiodun Yekeen, Mukhtar Oluwaseun Idris, et al.
International Journal of Biological Macromolecules (2024) Vol. 269, pp. 131840-131840
Closed Access | Times Cited: 4
AI-driven antimicrobial peptides for drug development
Y. K. Arora, H. B. Lalwani, Ajay Kumar, et al.
Methods in microbiology (2025)
Closed Access
Comparison Between Molecular Dynamics Potentials for Simulation of Graphene-Based Nanomaterials for Biomedical Applications
Laurentius Ivan Ageng Marhaendra, Yudi Rosandi, Amirah Mohd Gazzali, et al.
Drug Development and Industrial Pharmacy (2025), pp. 1-16
Closed Access
Applications of Molecular Dynamics Simulation and MM-PBSA Methods in Discovery of Veterinary Drugs
Nandan Kumar, Pranabesh Mandal, Bikash Kumar, et al.
(2025), pp. 325-366
Closed Access
Mining and Modification of Key Functional Regions of the Nattokinase Propeptide
Aixia Ma, Hong Wang, Huiyang Jia, et al.
Journal of Agricultural and Food Chemistry (2025)
Closed Access
Drug-Checking and Monitoring New Psychoactive Substances: Identification of the U-48800 Synthetic Opioid Using Mass Spectrometry, Nuclear Magnetic Resonance Spectroscopy, and Bioinformatic Tools
M. B. Pereira, Carlos Família, Daniel Martins, et al.
International Journal of Molecular Sciences (2025) Vol. 26, Iss. 5, pp. 2219-2219
Open Access
Exploring Cannabidiol‐ Transient Receptor Potential Vanilloid 3 mediated Biological activities‐Findings from Molecular Docking, Simulation, and Proteins Network Interactions
Jagdish Chand, N. S. Nagpure, Dheeraj Gupta, et al.
Chemistry & Biodiversity (2025)
Open Access
Molecular Modelling in Bioactive Peptide Discovery and Characterisation
Clement Agoni, Raúl Fernández-Díaz, Patrick Brendan Timmons, et al.
Biomolecules (2025) Vol. 15, Iss. 4, pp. 524-524
Open Access
Enhancing stability and catalytic activity of urate oxidase using natural deep eutectic solvent: insights from experimental and computational approaches
Zahra Soltani-Nezhad, Maryam Zaboli, Mojtaba Mortazavi, et al.
Journal of Biomolecular Structure and Dynamics (2025), pp. 1-18
Closed Access
Interactions between the picornavirus 3C(D) main protease and RNA induce liquid-liquid phase separation
Somnath Mondal, Saumyak Mukherjee, Kevin Namitz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Molecular-atomic scale insights into polymer-asphalt interactions induced by the oxidation of reactive oxygen species via computational simulation and multifield microscopy characterization
Mingjun Hu, Daquan Sun, Xingyi Zhu, et al.
Journal of Molecular Liquids (2024) Vol. 409, pp. 125492-125492
Closed Access | Times Cited: 3
BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Elizaveta Mukhaleva, Babgen Manookian, Hanyu Chen, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
Integrative approaches for characterizing protein dynamics: NMR, CryoEM, and computer simulations
Roman Zadorozhnyi, Angela M. Gronenborn, Tatyana Polenova
Current Opinion in Structural Biology (2023) Vol. 84, pp. 102736-102736
Closed Access | Times Cited: 9
Molecular Dynamics as a Tool for Virtual Ligand Screening
Grégory Menchon, Laurent Maveyraud, Georges Czaplicki
Methods in molecular biology (2023), pp. 33-83
Closed Access | Times Cited: 7
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