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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 22 citing articles:

Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variant Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 16, pp. 5272-5296
Open Access | Times Cited: 31
SARS-CoV-2 Omicron Subvariants Do Not Differ Much in Binding Affinity to Human ACE2: A Molecular Dynamics Study
Hoang Linh Nguyen, Thai Quoc Nguyen, Mai Suan Li
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 14, pp. 3340-3349
Open Access | Times Cited: 11
Ensemble-Based Mutational Profiling and Network Analysis of the SARS-CoV-2 Spike Omicron XBB Lineages for Interactions with the ACE2 Receptor and Antibodies: Cooperation of Binding Hotspots in Mediating Epistatic Couplings Underlies Binding Mechanism and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 8, pp. 4281-4281
Open Access | Times Cited: 8
Predicting Functional Conformational Ensembles and Binding Mechanisms of Convergent Evolution for SARS-CoV-2 Spike Omicron Variants Using AlphaFold2 Sequence Scanning Adaptations and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
AlphaFold2 Predictions of Conformational Ensembles and Atomistic Simulations of the SARS-CoV-2 Spike XBB Lineages Reveal Epistatic Couplings between Convergent Mutational Hotspots that Control ACE2 Affinity
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 19, pp. 4696-4715
Closed Access | Times Cited: 6
Atomistic Prediction of Structures, Conformational Ensembles and Binding Energetics for the SARS-CoV-2 Spike JN.1, KP.2 and KP.3 Variants Using AlphaFold2 and Molecular Dynamics Simulations: Mutational Profiling and Binding Free Energy Analysis Reveal Epistatic Hotspots of the ACE2 Affinity and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Probing conformational landscapes of binding and allostery in the SARS-CoV-2 omicron variant complexes using microsecond atomistic simulations and perturbation-based profiling approaches: hidden role of omicron mutations as modulators of allosteric signaling and epistatic relationships
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 32, pp. 21245-21266
Open Access | Times Cited: 13
Exploring Conformational Landscapes and Binding Mechanisms of Convergent Evolution for the SARS-CoV-2 Spike Omicron Variant Complexes with the ACE2 Receptor Using AlphaFold2-Based Structural Ensembles and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 25, pp. 17720-17744
Closed Access | Times Cited: 5
AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1657-1681
Closed Access | Times Cited: 4
Adaptive evolution of SARS-CoV-2 during a persistent infection for 521 days in an immunocompromised patient
Hanno Schmidt, Luca Aroha Schick, Jürgen Podlech, et al.
npj Genomic Medicine (2025) Vol. 10, Iss. 1
Open Access
Deciphering the free energy landscapes of SARS-CoV-2 wild type and Omicron variant interacting with human ACE2
Pham Dang Lan, Daniel A. Nissley, Edward P. O’Brien, et al.
The Journal of Chemical Physics (2024) Vol. 160, Iss. 5
Closed Access | Times Cited: 3
Surveillance of SARS-CoV-2 variants in Henan, China from 2023 to 2024
Yun Ju Christine Song, Bicong Wu, Hongxia Ma, et al.
Frontiers in Cellular and Infection Microbiology (2025) Vol. 15
Open Access
Comparative Analysis of Conformational Dynamics and Systematic Characterization of Cryptic Pockets in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB.1 Spike Complexes with the ACE2 Host Receptor: Confluence of Binding and Structural Plasticity in Mediating Networks of Conserved Allosteric Sites
Mohammed Alshahrani, Grace Gupta, Sian Xiao, et al.
Viruses (2023) Vol. 15, Iss. 10, pp. 2073-2073
Open Access | Times Cited: 8
Editorial for SARS-CoV-2 and COVID-19 Topical Collection
Luis Martínez‐Sobrido, Fernando Almazán
Viruses (2024) Vol. 16, Iss. 3, pp. 356-356
Open Access
An Immunoinformatic Approach for Identifying and Designing Conserved Multi-Epitope Vaccines for Coronaviruses
Yu Chuan Ong, Bimo Ario Tejo, Wei Boon Yap
Biomedicines (2024) Vol. 12, Iss. 11, pp. 2530-2530
Open Access
Quantitative Characterization and Prediction of the Binding Determinants and Immune Escape Hotspots for Groups of Broadly Neutralizing Antibodies Against Omicron Variants: Atomistic Modeling of the SARS-CoV-2 Spike Complexes with Antibodies
Mohammed Alshahrani, Victoria N. Parikh, Brian Foley, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access
Impact of mutations on the plant-based production of recombinant SARS-CoV-2 RBDs
Valentina Ruocco, Ulrike Vavra, Julia König-Beihammer, et al.
Frontiers in Plant Science (2023) Vol. 14
Open Access | Times Cited: 1
Internal drivers of the global pandemic of the Omicron variants of SARS‐CoV‐2
Yilin Niu, Wuxiu Quan, Yunyi Li, et al.
Medicine Advances (2024) Vol. 2, Iss. 3, pp. 262-273
Open Access
Markov State Models and Perturbation-Based Approaches Reveal Distinct Dynamic Signatures and Hidden Allosteric Pockets in the Emerging SARS-Cov-2 Spike Omicron Variants Complexes with the Host Receptor: The Interplay of Dynamics and Convergent Evolution Modulates Allostery and Functional Mechanisms
Sian Xiao, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Examining Functional Linkages Between Conformational Dynamics, Protein Stability and Evolution of Cryptic Binding Pockets in the SARS-CoV-2 Omicron Spike Complexes with the ACE2 Host Receptor: Recombinant Omicron Variants Mediate Variability of Conserved Allosteric Sites and Binding Epitopes
Mohammed Alshahrani, Grace Gupta, Sian Xiao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Accurate Characterization of Conformational Ensembles and Binding Mechanisms of the SARS-CoV-2 Omicron BA.2 and BA.2.86 Spike Protein with the Host Receptor and Distinct Classes of Antibodies Using AlphaFold2-Augmented Integrative Computational Modeling
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
AlphaFold2-Enabled Atomistic Modeling of Epistatic Binding Mechanisms for the SARS-CoV-2 Spike Omicron XBB.1.5, EG.5 and FLip Variants: Convergent Evolution Hotspots Cooperate to Control Stability and Conformational Adaptability in Balancing ACE2 Binding and Antibody Resistance
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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