Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Coordinated evolution at amino acid sites of SARS-CoV-2 spike
Alexey D. Neverov, Gennady G. Fedonin, Anfisa V. Popova, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 18

Showing 18 citing articles:

Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
Viruses (2023) Vol. 15, Iss. 5, pp. 1143-1143
Open Access | Times Cited: 22
Ensemble-Based Mutational Profiling and Network Analysis of the SARS-CoV-2 Spike Omicron XBB Lineages for Interactions with the ACE2 Receptor and Antibodies: Cooperation of Binding Hotspots in Mediating Epistatic Couplings Underlies Binding Mechanism and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 8, pp. 4281-4281
Open Access | Times Cited: 8
Predicting Functional Conformational Ensembles and Binding Mechanisms of Convergent Evolution for SARS-CoV-2 Spike Omicron Variants Using AlphaFold2 Sequence Scanning Adaptations and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
A comprehensive analysis of SARS-CoV-2 missense mutations indicates that all possible amino acid replacements in the viral proteins occurred within the first two-and-a-half years of the pandemic
Nicole Balasco, Gianluca Damaggio, Luciana Esposito, et al.
International Journal of Biological Macromolecules (2024) Vol. 266, pp. 131054-131054
Open Access | Times Cited: 6
AlphaFold2 Predictions of Conformational Ensembles and Atomistic Simulations of the SARS-CoV-2 Spike XBB Lineages Reveal Epistatic Couplings between Convergent Mutational Hotspots that Control ACE2 Affinity
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 19, pp. 4696-4715
Closed Access | Times Cited: 6
Exploring Conformational Landscapes and Binding Mechanisms of Convergent Evolution for the SARS-CoV-2 Spike Omicron Variant Complexes with the ACE2 Receptor Using AlphaFold2-Based Structural Ensembles and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 25, pp. 17720-17744
Closed Access | Times Cited: 5
AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1657-1681
Closed Access | Times Cited: 4
Early detection of emerging viral variants through analysis of community structure of coordinated substitution networks
Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages : Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Investigating and forecasting infectious disease dynamics using epidemiological and molecular surveillance data
Gerardo Chowell, Pavel Skums
Physics of Life Reviews (2024) Vol. 51, pp. 294-327
Closed Access | Times Cited: 1
Community structure and temporal dynamics of SARS-CoV-2 epistatic network allow for early detection of emerging variants with altered phenotypes
Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
Community Structure and Temporal Dynamics of Viral Epistatic Networks Allow for Early Detection of Emerging Variants with Altered Phenotypes
Fatemeh Mohebbi, Alex Zelikovsky, Serghei Mangul, et al.
Lecture notes in computer science (2024), pp. 356-359
Closed Access
Real-time identification of epistatic interactions in SARS-CoV-2 from large genome collections
Gabriel Innocenti, Maureen Obara, Bibiana Costa, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access
The importance of epistasis in the evolution of viral pathogens
Swathi Nachiar Manivannan, Carolina Díaz Arenas, Nathan D. Grubaugh, et al.
(2024)
Open Access
Topological data analysis identifies emerging adaptive mutations in SARS-CoV-2
Michael Bleher, Lukas Hahn, Maximilian Neumann, et al.
medRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 1
Real-time identification of epistatic interactions in SARS-CoV-2 from large genome collections
Gabriel Innocenti, Marco Galardini
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Accurate Characterization of Conformational Ensembles and Binding Mechanisms of the SARS-CoV-2 Omicron BA.2 and BA.2.86 Spike Protein with the Host Receptor and Distinct Classes of Antibodies Using AlphaFold2-Augmented Integrative Computational Modeling
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
AlphaFold2-Enabled Atomistic Modeling of Epistatic Binding Mechanisms for the SARS-CoV-2 Spike Omicron XBB.1.5, EG.5 and FLip Variants: Convergent Evolution Hotspots Cooperate to Control Stability and Conformational Adaptability in Balancing ACE2 Binding and Antibody Resistance
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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