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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 1-25 of 30 citing articles:

Structural dynamics in the evolution of SARS-CoV-2 spike glycoprotein
Valeria Calvaresi, Antoni G. Wrobel, Joanna Toporowska, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 45
Immune imprinting and next-generation coronavirus vaccines
Chloe Qingzhou Huang, Sneha Vishwanath, George Carnell, et al.
Nature Microbiology (2023) Vol. 8, Iss. 11, pp. 1971-1985
Closed Access | Times Cited: 44
The Interplay of Furin Cleavage and D614G in Modulating SARS-CoV-2 Spike Protein Dynamics
Sophie R. Shoemaker, Megan Luo, Kim-Marie A. Dam, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access | Times Cited: 1
Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
Viruses (2023) Vol. 15, Iss. 5, pp. 1143-1143
Open Access | Times Cited: 22
Predicting Functional Conformational Ensembles and Binding Mechanisms of Convergent Evolution for SARS-CoV-2 Spike Omicron Variants Using AlphaFold2 Sequence Scanning Adaptations and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
hACE2-Induced Allosteric Activation in SARS-CoV versus SARS-CoV-2 Spike Assemblies Revealed by Structural Dynamics
Chengbo Chen, Richard Zhu, Edgar A. Hodge, et al.
ACS Infectious Diseases (2023) Vol. 9, Iss. 6, pp. 1180-1189
Open Access | Times Cited: 15
Exploring Conformational Landscapes and Binding Mechanisms of Convergent Evolution for the SARS-CoV-2 Spike Omicron Variant Complexes with the ACE2 Receptor Using AlphaFold2-Based Structural Ensembles and Molecular Dynamics Simulations
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Physical Chemistry Chemical Physics (2024) Vol. 26, Iss. 25, pp. 17720-17744
Closed Access | Times Cited: 5
AlphaFold2-Enabled Atomistic Modeling of Structure, Conformational Ensembles, and Binding Energetics of the SARS-CoV-2 Omicron BA.2.86 Spike Protein with ACE2 Host Receptor and Antibodies: Compensatory Functional Effects of Binding Hotspots in Modulating Mechanisms of Receptor Binding and Immune Escape
Nishank Raisinghani, Mohammed Alshahrani, Grace Gupta, et al.
Journal of Chemical Information and Modeling (2024) Vol. 64, Iss. 5, pp. 1657-1681
Closed Access | Times Cited: 4
Dynamics, allostery, and stabilities of whole virus particles by amide hydrogen/deuterium exchange mass spectrometry (HDXMS)
Varun Venkatakrishnan, Sean M. Braet, Ganesh S. Anand
Current Opinion in Structural Biology (2024) Vol. 86, pp. 102787-102787
Closed Access | Times Cited: 4
Variation in structural motifs within SARS-related coronavirus spike proteins
Francesca R. Hills, Alice-Roza Eruera, James Hodgkinson‐Bean, et al.
PLoS Pathogens (2024) Vol. 20, Iss. 5, pp. e1012158-e1012158
Open Access | Times Cited: 4
SARS CoV-2 spike adopts distinct conformational ensembles in situ
Amanda J. Gramm, Sean M. Braet, Bindu Y. Srinivasu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Closed Access
Dual‐Locking the SARS‐CoV‐2 Spike Trimer: An Amphipathic Molecular “Bolt” Stabilizes Conserved Druggable Interfaces for Coronavirus Inhibition
Shiliang Li, Fang Ye, Yucheng Zheng, et al.
Advanced Science (2025)
Open Access
Mechanisms of allostery at the viral surface through the eyes of molecular simulation
Firdaus Samsudin, Lorena Zuzic, Jan K. Marzinek, et al.
Current Opinion in Structural Biology (2023) Vol. 84, pp. 102761-102761
Closed Access | Times Cited: 8
Exploring Binding Pockets in the Conformational States of the SARS-CoV-2 Spike Trimers for the Screening of Allosteric Inhibitors Using Molecular Simulations and Ensemble-Based Ligand Docking
Grace Gupta, Gennady M. Verkhivker
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 9, pp. 4955-4955
Open Access | Times Cited: 3
Exploring Conformational Landscapes and Cryptic Binding Pockets in Distinct Functional States of the SARS-CoV-2 Omicron BA.1 and BA.2 Trimers: Mutation-Induced Modulation of Protein Dynamics and Network-Guided Prediction of Variant-Specific Allosteric Binding Sites
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
Viruses (2023) Vol. 15, Iss. 10, pp. 2009-2009
Open Access | Times Cited: 8
Comparative Analysis of Conformational Dynamics and Systematic Characterization of Cryptic Pockets in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB.1 Spike Complexes with the ACE2 Host Receptor: Confluence of Binding and Structural Plasticity in Mediating Networks of Conserved Allosteric Sites
Mohammed Alshahrani, Grace Gupta, Sian Xiao, et al.
Viruses (2023) Vol. 15, Iss. 10, pp. 2073-2073
Open Access | Times Cited: 8
New star-shaped ligands generated by evolutionary fitting the Omicron spike inner-cavity
Julio Coll
(2023)
Open Access | Times Cited: 7
Coarse-Grained Molecular Simulations and Ensemble-Based Mutational Profiling of Protein Stability in the Different Functional Forms of the SARS-CoV-2 Spike Trimers: Balancing Stability and Adaptability in BA.1, BA.2 and BA.2.75 Variants
Gennady M. Verkhivker, Mohammed Alshahrani, Grace Gupta
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 7, pp. 6642-6642
Open Access | Times Cited: 5
Peripheral Transcriptomics in Acute and Long-Term Kidney Dysfunction in SARS-CoV2 Infection
Pushkala Jayaraman, Madhumitha Rajagopal, Ishan Paranjpe, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Inclusion of deuterated glycopeptides provides increased sequence coverage in hydrogen/deuterium exchange mass spectrometry analysis of SARS‐CoV‐2 spike glycoprotein
Christopher A. Haynes, Theodore R. Keppel, Betlehem Mekonnen, et al.
Rapid Communications in Mass Spectrometry (2024) Vol. 38, Iss. 5
Open Access
Fc-independent SARS-CoV-2 infection-enhancing antibodies decouple N-terminal and receptor-binding domains by cross-linking neighboring spikes
Floris J. van Eerden, Songling Li, Tina Lusiany, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
The first report of SARS-CoV-2 genome in the groundwater of Tehran, Iran: A call to action for public health
S. Mahdi Hosseinian, Seyed Masoud Hosseini, Paria Barooni Rashno, et al.
Research Square (Research Square) (2024)
Closed Access
Application of HDX–MS for the Structural Characterization of Glycoproteins
Miklós Guttman
Royal Society of Chemistry eBooks (2024), pp. 300-314
Closed Access
Inclusion of glycopeptides in hydrogen/deuterium exchange mass spectrometry analysis of SARS-CoV-2 spike ectodomain provides in-creased sequence coverage
Christopher A. Haynes, Theodore R. Keppel, Betlehem Mekonnen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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