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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

virMine: automated detection of viral sequences from complex metagenomic samples
Andrea Garretto, Thomas Hatzopoulos, Catherine Putonti
PeerJ (2019) Vol. 7, pp. e6695-e6695
Open Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Metaviral SPAdes: assembly of viruses from metagenomic data
Dmitry Antipov, Mikhail Raiko, Alla Lapidus, et al.
Bioinformatics (2020) Vol. 36, Iss. 14, pp. 4126-4129
Open Access | Times Cited: 223
The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View
João B. Xavier, Vincent B. Young, Joseph D. Skufca, et al.
Trends in cancer (2020) Vol. 6, Iss. 3, pp. 192-204
Open Access | Times Cited: 201
Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
Dimitri Boeckaerts, Michiel Stock, Bjorn Criel, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 77
DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Shu‐Fang Vivienne Wu, Zhencheng Fang, Jie Tan, et al.
GigaScience (2021) Vol. 10, Iss. 9
Open Access | Times Cited: 63
Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data
Siu Fung Stanley Ho, Nicole E. Wheeler, Andrew Millard, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 33
Challenges of Studying the Human Virome – Relevant Emerging Technologies
Mohammadali Khan Mirzaei, Jinling Xue, Rita Costa, et al.
Trends in Microbiology (2020) Vol. 29, Iss. 2, pp. 171-181
Open Access | Times Cited: 66
Current and Promising Approaches to Identify Horizontal Gene Transfer Events in Metagenomes
Gavin M. Douglas, Morgan G. I. Langille
Genome Biology and Evolution (2019) Vol. 11, Iss. 10, pp. 2750-2766
Open Access | Times Cited: 62
Evaluation of computational phage detection tools for metagenomic datasets
Kenneth Schackart, Jessica B. Graham, Alise J. Ponsero, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 20
Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
Bridget Hegarty, James A. Riddell, Eric Bastien, et al.
mSystems (2024) Vol. 9, Iss. 3
Open Access | Times Cited: 8
Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types
Ilya Plyusnin, Ravi Kant, Anne J. Jääskeläinen, et al.
Virus Evolution (2020) Vol. 6, Iss. 2
Open Access | Times Cited: 40
Detecting viral genomes in the female urinary microbiome
Andrea Garretto, Krystal Thomas‐White, Alan J. Wolfe, et al.
Journal of General Virology (2018) Vol. 99, Iss. 8, pp. 1141-1146
Open Access | Times Cited: 45
Experimental approaches to tracking mobile genetic elements in microbial communities
Christina C. Saak, Cong B. Dinh, Rachel J. Dutton
FEMS Microbiology Reviews (2020) Vol. 44, Iss. 5, pp. 606-630
Open Access | Times Cited: 38
Computational approaches in viral ecology
Varada Khot, Marc Strous, Alyse K. Hawley
Computational and Structural Biotechnology Journal (2020) Vol. 18, pp. 1605-1612
Open Access | Times Cited: 30
Method development for cross-study microbiome data mining: Challenges and opportunities
Xiaoquan Su, Gongchao Jing, Yufeng Zhang, et al.
Computational and Structural Biotechnology Journal (2020) Vol. 18, pp. 2075-2080
Open Access | Times Cited: 28
Simulation study and comparative evaluation of viral contiguous sequence identification tools
Cody Glickman, Jo Hendrix, Michael Strong
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 25
VITALdb: to select the best viroinformatics tools for a desired virus or application
M. K. Koul, Shalini kaushik, Kavya Singh, et al.
Briefings in Bioinformatics (2025) Vol. 26, Iss. 2
Open Access
Virome Sequencing of the Human Intestinal Mucosal–Luminal Interface
Austin Yan, James Butcher, David Mack, et al.
Frontiers in Cellular and Infection Microbiology (2020) Vol. 10
Open Access | Times Cited: 17
Hecatomb: an integrated software platform for viral metagenomics
Michael J. Roach, Sarah J. Beecroft, Kathie A. Mihindukulasuriya, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 2
Development and Validation of a Bioinformatic Workflow for the Rapid Detection of Viruses in Biosecurity
David W. Waite, Lia W. Liefting, C. Delmiglio, et al.
Viruses (2022) Vol. 14, Iss. 10, pp. 2163-2163
Open Access | Times Cited: 10
Current trends in RNA virus detection through metatranscriptome sequencing data
So Nakagawa, Shoichi Sakaguchi, Atsushi Ogura, et al.
FEBS Open Bio (2023) Vol. 13, Iss. 6, pp. 992-1000
Open Access | Times Cited: 5
Does the Human Gut Virome Contribute to Host Health or Disease?
Grazia Pavia, Nadia Marascio, Giovanni Matera, et al.
Viruses (2023) Vol. 15, Iss. 11, pp. 2271-2271
Open Access | Times Cited: 5
Temporal Variability of Virioplankton during a Gymnodinium catenatum Algal Bloom
Xiao-Peng Du, Zhonghua Cai, Ping Zuo, et al.
Microorganisms (2020) Vol. 8, Iss. 1, pp. 107-107
Open Access | Times Cited: 14
Gauge your phage: Benchmarking of bacteriophage identification tools in metagenomic sequencing data
Siu Fung Stanley Ho, Nicole E. Wheeler, Andrew Millard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 12
Advances in the field of phage-based therapy with special emphasis on computational resources
Nisha Bajiya, Anjali Dhall, Suchet Aggarwal, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Closed Access | Times Cited: 9
Optimized Metavirome Analysis of Marine DNA Virus Communities for Taxonomic Profiling
Kang Eun Kim, Seung Won Jung, Jun Yong Park, et al.
Ocean Science Journal (2022) Vol. 57, Iss. 2, pp. 259-268
Closed Access | Times Cited: 8
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